plot_flowstyle.Rd
Simulates flow cytometry plots for single cell rna seq data
plot_flowstyle(object, markernames, classif_col = "ident", ...) # S3 method for data.frame plot_flowstyle( object, markernames, classif_col = "ident", warn = TRUE, highlight_class = NULL, ... ) # S3 method for Seurat plot_flowstyle(object, markernames, classif_col = "ident", ...)
object | data, either a Seurat of a data frame object |
---|---|
markernames | names of the markers to be used for the plot |
classif_col | name of the classification column to be used for the grouping, defaults to "ident" |
... | additional argumetns to be passed to GGally::ggpairs |
warn | logical indicating if warninf should be shown, defaults to TRUE |
highlight_class | a character indicating a class if it wants to be highlighted. ie "1" |
a ggplot grid with the plots
Note that it imputes a little bit of noise to values of 0 just for the Sake of visualization
data.frame
: Draw a flowstyle plot from a data.frame
Seurat
: Draw a flowstyle plot from a Seurat object