Queries gene symbols and returns if they are annotated as membrane-localized

returns a logical vector indicating wether there is a GO annotation corresponding to *integral component of membrane*. the species to be queried can be changed by using the corresponging database.

is_gene_membrane(
  gene_symbols,
  db = org.Hs.eg.db::org.Hs.eg.db,
  evidence_codes = c("EXP", "IDA", "IPI", "IMP", "IGI")
)

Arguments

gene_symbols

a character vector of gene symbols. zb: CD1A
db

a database that inherits the select property. defaults to org.Hs.eg.db
evidence_codes

the evidence codes that will be considered for the annotation. if set to null will return all annotations. defaults to c("EXP", "IDA", "IPI", "IMP", "IGI")

Value

logical vector indicating which gene_symbols match the criteria.

Details

Can also filter the annotations by the level of annotation desired. For additional information on the accepted annotation codes please visit http://geneontology.org/docs/guide-go-evidence-codes/

Examples

is_gene_membrane(c("CD4", "UPP1"))
#> [1]  TRUE FALSE
# [1]  TRUE FALSE